Komputasi Genomik (Q)
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General
Announcements
Week #1: Introduction to Computational Genomic
Introduction to Computational Genomic
Week #2: DNA Central Dogma
DNA Central Dogma
Week #3: Sequence Statistics
Sequence Statistics
Pseudogenes
Week #4: GC Content, Markov Model
Text Book
Introduction to Hidden Markov Model (HMM)
HMM Program Example
HMM source code
Week #5: Open Reading Frame Finder, Change Point Analysis
Open Reading Frame (ORF)
Week #7: Sequence Alignment
Sequence Alignment
sequence alignment methods open source
Sequence Alignment Program Example
Week #6: Technical Skill Development
HMM for GC Content
Finding DNA with HMM
New solutions for gene finding
Hidden Markov Models and their Applications in Biological Sequence Analysis
A hidden Markov model that finds genes in E.coli DNA
Week #8: Project Assignment and Mid Term Exam
Section 10
Class Announcement
Genomic Sequence Analysis
Section 11
Assignment #1
Assignment #1b
Section 12
Gnome Database and Introduction to R
Genome Dataset
Section 13
NCBI Data Analysis (Coding practice)
Assignment #2
Assignment #3
Word Distribution and Occurrences
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Komputasi Genomik (Q)
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Institut Teknologi Sepuluh Nopember
Sarjana
Fakultas Teknologi Elektro dan Informatika Cerdas
S-1 TEKNIK BIOMEDIK
Semester Genap 2022/2023
Komputasi Genomik (Q)
Summary
Komputasi Genomik (Q)
Teacher:
Achmad Arifin
Teacher:
Mohammad Nuh
Teacher:
Norma Hermawan